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Adding an option to fit BIDS-study layout (updated)#369

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djarecka wants to merge 5 commits intoPennLINC:mainfrom
djarecka:structurechange_1
Open

Adding an option to fit BIDS-study layout (updated)#369
djarecka wants to merge 5 commits intoPennLINC:mainfrom
djarecka:structurechange_1

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@djarecka
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instead of #361 (after rewriting history went wrong); I included the newest changes to main.
From the previous description:

  • allowing for configuring analysis_path
  • ading rias to .babs and gitignore
  • adding initial configuration file to .babs, so it can be read whenever is neeeded

An example presenting the usage and the layout can be found on the
babs_demo repo, follow the section for the bids_layout

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codecov-commenter commented Apr 17, 2026

Codecov Report

❌ Patch coverage is 87.87879% with 4 lines in your changes missing coverage. Please review.
✅ Project coverage is 79.12%. Comparing base (95fd99d) to head (42a8cea).

Files with missing lines Patch % Lines
babs/bootstrap.py 71.42% 2 Missing and 2 partials ⚠️
Additional details and impacted files
@@            Coverage Diff             @@
##             main     #369      +/-   ##
==========================================
+ Coverage   79.07%   79.12%   +0.04%     
==========================================
  Files          17       17              
  Lines        2079     2103      +24     
  Branches      362      366       +4     
==========================================
+ Hits         1644     1664      +20     
- Misses        300      302       +2     
- Partials      135      137       +2     

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@tien-tong tien-tong self-requested a review April 23, 2026 13:04
Comment thread babs/container.py
processing_level,
system,
project_root=None,
analysis_dir='analysis',
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new arg but docstring wasn't updated

@tien-tong tien-tong linked an issue Apr 24, 2026 that may be closed by this pull request
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Are RIAs necessary?

3 participants